> For clean Markdown of any page, append .md to the page URL.
> For a complete documentation index, see https://docs.benchling.com/docs/api/benchling-api/nucleotide-alignment/llms.txt.
> For AI client integration (Claude Code, Cursor, etc.), connect to the MCP server at https://docs.benchling.com/_mcp/server.

# Nucleotide Alignment


## API Docs

- Nucleotide Alignment [List NucleotideAlignment items](https://docs.benchling.com/docs/api/benchling-api/nucleotide-alignment/list.md)
- Nucleotide Alignment [Get NucleotideAlignment by ID](https://docs.benchling.com/docs/api/benchling-api/nucleotide-alignment/get.md)
- Nucleotide Alignment [Delete NucleotideAlignment](https://docs.benchling.com/docs/api/benchling-api/nucleotide-alignment/delete.md)
- Nucleotide Alignment [List AlignedNucleotideSequence items](https://docs.benchling.com/docs/api/benchling-api/nucleotide-alignment/alignednucleotidesequences-list.md)
- Nucleotide Alignment [Batch delete NucleotideAlignment](https://docs.benchling.com/docs/api/benchling-api/nucleotide-alignment/batchdelete.md)
- Nucleotide Alignment [Create a consensus nucleotide alignment](https://docs.benchling.com/docs/api/benchling-api/nucleotide-alignment/createconsensusalignment.md)
- Nucleotide Alignment [Create a template nucleotide alignment](https://docs.benchling.com/docs/api/benchling-api/nucleotide-alignment/createtemplatealignment.md)
- Nucleotide Alignment [Poll async task status](https://docs.benchling.com/docs/api/benchling-api/nucleotide-alignment/createconsensusalignment-get.md)

## OpenAPI Specification

The raw OpenAPI 3.1 specification for this API is available at:
- [OpenAPI JSON](https://docs.benchling.com/docs/api/benchling-api/nucleotide-alignment/openapi.json)
- [OpenAPI YAML](https://docs.benchling.com/docs/api/benchling-api/nucleotide-alignment/openapi.yaml)