> For clean Markdown of any page, append .md to the page URL.
> For a complete documentation index, see https://docs.benchling.com/docs/api/v2/benchling-api/nucleotide-alignments/llms.txt.
> For AI client integration (Claude Code, Cursor, etc.), connect to the MCP server at https://docs.benchling.com/_mcp/server.

# Nucleotide Alignments


## API Docs

- Nucleotide Alignments [List Nucleotide Alignments](https://docs.benchling.com/docs/api/v2/benchling-api/nucleotide-alignments/list-nucleotide-alignments.md)
- Nucleotide Alignments [Get a Nucleotide Alignment](https://docs.benchling.com/docs/api/v2/benchling-api/nucleotide-alignments/get-nucleotide-alignment.md)
- Nucleotide Alignments [Delete a Nucleotide Alignment](https://docs.benchling.com/docs/api/v2/benchling-api/nucleotide-alignments/delete-nucleotide-alignment.md)
- Nucleotide Alignments [Create a consensus Nucleotide Alignment](https://docs.benchling.com/docs/api/v2/benchling-api/nucleotide-alignments/create-consensus-nucleotide-alignment.md)
- Nucleotide Alignments [Create a template Nucleotide Alignment](https://docs.benchling.com/docs/api/v2/benchling-api/nucleotide-alignments/create-template-nucleotide-alignment.md)

## OpenAPI Specification

The raw OpenAPI 3.1 specification for this API is available at:
- [OpenAPI JSON](https://docs.benchling.com/docs/api/v2/benchling-api/nucleotide-alignments/openapi.json)
- [OpenAPI YAML](https://docs.benchling.com/docs/api/v2/benchling-api/nucleotide-alignments/openapi.yaml)