Get Molecule by ID

GET

https://{tenant_name}.benchling.com/api/v3/molecule/:molecule_id

GET

/api/v3/molecule/:molecule_id

curl https://{tenant_name}.benchling.com/api/v3/molecule/molecule_id \
     -H "Authorization: Bearer <token>"

{
  "__typename": "__typename",
  "authors": "authors",
  "creator": {
    "__typename": "__typename",
    "id": "id"
  },
  "schemaFields": [
    {
      "__typename": "__typename",
      "id": "id",
      "linkedEntityId": "linkedEntityId"
    }
  ],
  "aliases": [
    "aliases"
  ],
  "archiveReason": "archiveReason",
  "archived": true,
  "canonicalSmiles": "canonicalSmiles",
  "createdAt": "createdAt",
  "customFields": [
    {
      "__typename": "__typename",
      "name": "name",
      "value": "value"
    }
  ],
  "entityRegistryId": "entityRegistryId",
  "folder": {
    "__typename": "__typename",
    "id": "id"
  },
  "id": "id",
  "modifiedAt": "modifiedAt",
  "name": "name",
  "originalSmiles": "originalSmiles",
  "project": {
    "__typename": "__typename",
    "id": "id"
  },
  "registrationOrigin": {
    "__typename": "__typename",
    "originEntry": {
      "__typename": "__typename",
      "id": "id"
    },
    "registeredAt": "registeredAt"
  },
  "registry": {
    "__typename": "__typename",
    "id": "id"
  },
  "schema": {
    "__typename": "__typename",
    "id": "id"
  },
  "smilesWithCounterparts": "smilesWithCounterparts",
  "typedSchema": {
    "__typename": "__typename",
    "id": "id"
  }
}

Get a single Molecule by ID.

Authentication

AuthorizationBearer

Bearer authentication of the form Bearer <token>, where token is your auth token.

Path parameters

molecule_idstringRequired

ID of the Molecule.

Query parameters

returningstringOptional

Comma-separated list of top-level fields to include in each returned item. Cannot overlap with omit.

omitstringOptional

Comma-separated list of top-level fields to omit from each returned item. Cannot overlap with returning.

Response

__typenamestringOptional

authorsstring or nullOptionalformat: "uri"

creatorobject or nullOptional

schemaFieldslist of objects or nullOptional

aliaseslist of strings or nullOptional

archiveReasonstring or nullOptional

archivedbooleanOptional

canonicalSmilesstring or nullOptional

The canonicalized chemical structure in SMILES format. E.g., Nc1nc(=O)n([H:1])cc1C1CC1

createdAtstring or nullOptional

customFieldslist of objects or nullOptional

entityRegistryIdstring or nullOptional

The registry-assigned identifier for this item (e.g. its registry ID shown in the UI), present only once the item has been registered. Null if the item is not registered.

folderobject or nullOptional

idstringOptional

modifiedAtstring or nullOptional

namestring or nullOptional

Name of the item.

originalSmilesstring or nullOptional

The original chemical structure in SMILES format. Null if the user did not originally provide SMILES. E.g., Nc1nc(=O)n([H:1])cc1C1CC1

projectobject or nullOptional

registrationOriginobject or nullOptional

Provenance of this item’s registration — where and when it was registered. Null if unregistered.

registryobject or nullOptional

The Registry this item belongs to, if registered. Null if unregistered.

schemaobject or nullOptional

Use typedSchema instead, which returns the per-type schema.

smilesWithCounterpartsstring or nullOptional

The full chemical structure in SMILES format, including salt and solvent counterparts as dot-disconnected fragments (each repeated according to its ratio). When a compound has no counterparts, this equals canonicalSmiles.

typedSchemaobject or nullOptional

Errors

400

Molecule Get Request Bad Request Error

403

Molecule Get Request Forbidden Error

404

Molecule Get Request Not Found Error

429

Molecule Get Request Too Many Requests Error

500

Molecule Get Request Internal Server Error