[Beta] Biologics

Table Overview

Name	$raw Filters	Description
`protein`		Lists all protein entities
`protein_format`		Lists all built-in and custom protein formats

Table Row	Definition	Value Type	Example values (if applicable)	Notes
id	Unique Benchling-prescribed ID for each line item in table	Format dependent on table	bfi_nDYnaCH3
source_id	The project or registry that the object's permissions comes from	Foreign key for project.id or registry ID	src_hh9ffHqV	If an object isn't in a project, the permissions will be derived from the Registry
archived$	Archival state for object in Benchling	Boolean	true, false	true = object archived
archive_purpose$	Archival reason for object in Benchling	Text	Made in error, Retired, Expended, Shipped, Contaminated, Expired, Missing, Merged, Other	Available archive purpose options dependent on object
creator_id	Unique identifier for creator of object	Foreign key for user.id	ent_yXrL3BjX
created_at	Date created for object	Timestamp without timezone	2025-05-09T18:32:17.038287
modified_at	Date object was modified in Benchling	Timestamp without timezone	2025-05-09T18:32:17.038287
name	Name of object in Benchling	Character Varying	IgG antibody
format_id	Unique indentifier for this entity's protein format	Foreign key for protein_format.id	builtinabfmt_scFv
chains	List of chain entities making up this protein	JSONB	[ {"type": "NONE", "label": "Chain", "entity_id": "prtn_w9dRqLGUsu"} ]
domains	List of domain entities making up this protein	JSONB	[ {"type": "VH", "label": "VH", "entity_id": "prtn_7GCtNpbGNq"},[ {"type": "CH1", "label": "CH1, "entity_id": "prtn_Amd8NAg"}]

Table Row	Definition	Value Type	Example values (if applicable)
id	Unique Benchling-prescribed ID for each line item in table	Format dependent on table	abfmt_d4iRjWbvIy
name	Name of object in Benchling	Character Varying	IgG antibody format
veritas_name	Name of format using VERITAS nomenclature	Character Varying	scFv!-heteroFc-F
chains	List of chain entities making up this protein	JSONB	[ {"type": "NONE", "label": "Chain", "entity_id": "prtn_w9dRqLGUsu"} ]
domains	List of domain entities making up this protein	JSONB	[ {"type": "VH", "label": "VH", "entity_id": "prtn_7GCtNpbGNq"},[ {"type": "CH1", "label": "CH1, "entity_id": "prtn_Amd8NAg"}]
chain_positions	List of each chain position in the physical structure of the protein format	JSONB	[ {"ref": 4, "type": "NONE", "domain_position_refs": [ 1, 2, 3 ]} ]
domain_positions	List of each domain position in the physical structure of the protein format	JSONB	[ {"ref": 1, "type": "VH", "optional": false}, {"ref": 2, "type": "CH1", "optional": false}, {"ref": 3, "type": "L", "optional": false}, {"ref": 4, "type": "VL", "optional": false}]